Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs35528636 chr6:25995701 A/C 7.66E-9 518 41.13 37.03 3.37 KM Plot
KIRC rs35546156 chr6:50829785 C/T 1.01E-6 522 39.62 43.55 11.35 KM Plot
KIRC rs35565616 chr10:81951479 C/T 1.61E-6 521 38.93 51.03 3.93 KM Plot
KIRC rs35590232 chr6:2367903 T/G 3.45E-6 513 40 38.35 12.07 KM Plot
KIRC rs35618989 chr12:29541301 G/A 3.7E-8 518 40.57 39.85 6.07 KM Plot
KIRC rs35630035 chr9:6713219 G/A 6.72E-6 521 40.78 42.33 19.68 KM Plot
KIRC rs35635027 chr2:2621846 G/A 4.06E-5 521 38.98 44.57 8.35 KM Plot
KIRC rs35639902 chr7:7743961 T/C 4.68E-5 527 38.47 48.48 5.47 KM Plot
KIRC rs35701438 chr10:81942603 T/G 1.61E-6 521 38.93 51.03 3.93 KM Plot
KIRC rs35778245 chr6:25944803 G/A 5.07E-5 524 42.33 30.52 6.8 KM Plot
KIRC rs35778847 chr3:48346985 G/T 3.23E-5 522 39.62 41.27 19.13 KM Plot
KIRC rs35802497 chr3:48345449 A/T 3.23E-5 522 39.62 41.27 19.13 KM Plot
KIRC rs35892674 chr6:2432009 C/T 8.29E-8 520 40 40.78 5.47 KM Plot
KIRC rs35918040 chr6:2416262 T/C 1.33E-6 513 40 40.57 16.83 KM Plot
KIRC rs35941682 chr6:50805491 TA/T 4.47E-6 523 40 40.6 15.3 KM Plot